STRScan

Latest profiling of NGS data

YSTR markers
CODIS markers

HG00140

ERR251013 YSTRs
ERR251013 CODIS
ERR016167 YSTRs
ERR016167 CODIS

HG00145

SRR099957 YSTRs
SRR099957 CODIS

HG00149

ERR013144 YSTRs
ERR013144 CODIS

Supporting Reads

Venter
1. YSTRs
2. CODIS
HG00140
HG00145
1. SRR099957 YSTRs
2. SRR099957 CODIS
HG00149
1. ERR013144 YSTRs
2. ERR013144 CODIS

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Venter Genome
- YSTR markers
- CODIS markers

HG00140

HG00145
- YSTR markers
- CODIS markers

HG00149
- ERR013144 YSTRs
- ERR013144 CODIS

STR markers detected by STRScan

Venter Genome: YSTR markers detected by STRScan
Marker	Repeat Motif	Reference allele	Period	STRScan allele	Supp. Reads
DYS19	(TCTA)12CCTA(TCTA)3	15	4	14	1
DYS385a/b	(GAAA)14	14	4	11,14	2,1
DYS390	(TAGA)4(CAGA)1(TAGA)11(CAGA)8	24	4	23	1
DYS388	(AAT)12	12	3	12	2
DYS389I	(TCTG)3(TCTA)9	12	4	13	3
DYS389II	(TCTG)5(TCTA)12TCATTATACCTACTTCTGTATCCAACTCTCATCTGTATTATCTATGTA(TCTG)3(TCTA)9	29	4	29	2
DYS391	(TCTA)11	11	4	10	1
DYS392	(TAT)13	13	3	13	2
DYS393	(AGAT)12	12	4	13	2
DYS406S1	(TATC)10	10	4	10	2
DYS413a/b	(TG)23	23	2	22,22	3;3
DYS426	(GTT)12	12	3	12	1
DYS434	(CTAT)9	9	4	9	1
DYS436	(GTT)12	12	3	12	3
DYS438	(TTTTC)10	10	5	12	1
DYS439	(GATA)13	13	4	12	1
DYS442	(TAGA)12(CAGA)3(GATA)2	17	4	16	1
DYS445	(TTTA)12	12	4	12	1
DYS447	(TAATA)6(TAAAA)1(TAATA)9(TAAAA)1(TAATA)6	23	5	25	1
DYS449	(TTTC)15TCTCTCTCCTCCTCTTTCTTTCCTTCTTTCTTTCTTTTCCTCTTTCCTTC(TTTC)14	14	4	30	1
DYS450	(TTTTA)9	8	5	9	3
DYS454	(AAAT)11	11	4	11	5
DYS455	(AAAT)11	11	4	11	1
DYS458	(GAAA)16	16	4	17	4
DYS459a/b	(TAAA)10	10	4	9;9	1;1
DYS460	(ATAG)10	10	4	12	2
DYS461	(TAGA)11(CAGA)1	12	4	12	4
DYS462	(TATG)11	11	4	11	1
DYS472	(AAT)8	8	3	8	3
DYS481	(CTT)22	22	3	22	3
DYS485	(TTA)16	16	3	16	2
DYS490	(TTA)12	12	3	12	1
DYS492	(TTA)11	12	3	12	2
DYS494	(TTA)10	10	3	9	2
DYS495	(AAT)15	15	3	16	1
DYS505	(TCCT)12	12	4	12	2
DYS511	(GATA)9	9	4	10	3
DYS520	(ATAG)10(ATAC)10	20	4	21	1
DYS531	(AAAT)11	11	4	12	1
DYS533	(ATCT)12	12	4	13	2
DYS534	(CTTT)15	15	4	16	1
DYS537	(TCTA)10	10	4	10	1
DYS549	(GATA)13	13	4	12	1
DYS556	(AATA)11	11	4	11	2
DYS557	(TTTC)16	16	4	16	1
DYS565	(AATA)11	12	4	11	2
DYS568	(TAAA)10	11	4	10	3
DYS570	(TTTC)17	17	4	17	3
DYS576	(AAAG)17	16	4	18	1
DYS578	(AAAT)9	9	4	9	2
DYS590	(TTTTG)8	8	5	9	3
DYS594	(AAATA)10	10	5	10	3
DYS617	(TTA)12	12	3	12	3
DYS635	(TCTA)4(TGTA)2(TCTA)2(TGTA)2(TCTA)2(TGTA)2(TCTA)9	23	4	23	2
DYS636	(TTTA)11	12	4	11	1
DYS638	(TTTA)11	11	4	11	1
DYS640	(TAAA)9	9	4	9	2
DYS641	(TAAA)10	10	4	10	1
DYS714	(TTTCT)19(CTTCT)2(TTTCT)2(CTTCT)2(TTTCT)2	27	5	25	1
DYS717	(GTACT)6(GTATT)10	16	5	16	2
YCII	(CA)23	23	2	19,23	3,5

Venter Genome: CODIS markers detected by STRScan
Marker	Repeat Motif	Ref Allele	Period	STRScan allele	Supp. Reads
TPOX	(AATG)8	8	4	8	5
CSF1PO	(AGAT)13	13	4	11	7
D7S820	(GATA)13	13	4	10	3
D8S1179	(TCTA)1(TCTG)1(TCTA)11	13	4	12	1
TH01	(AATG)7	7	4	6	2
PentaE	(AAAGA)5	5	5	12	2
D16S539	(GATA)11	11	4	12	2
D18S51	(AGAA)18	18	4	14	2
PentaD	(AAAGA)13	13	5	13	2
FGAa/b	(TTTC)3(TTTT)1(TTCT)1(CTTT)14(CTCC)1(TTCC)2	22	4	21;26	1;1
D13S317a/b	(TATC)11	11	4	12;13	1;2
D3S1358a/b	(TCTA)1(TCTG)1(TCTA)14	16	4	16;16	1;2

HG00140 ERR016167 YSTR markers detected by STRScan
Marker	Repeat Motif	Reference allele	Period	STRSCan allele	Supp. Reads
DYS458	(GAAA)16	16	4	16	1
DYS459	(TAAA)10	10	4	7;9	2;2
DYS520	(ATAG)10(ATAC)10	20	4	14	1
DYS531	(AAAT)11	11	4	12	1
DYS565	(AATA)11	12	4	10	1
DYS438	(TTTTC)10	10	5	10	1
DYS439	(GATA)13	13	4	11	1
DYS472	(AAT)8	8	3	8	2
DYS578	(AAAT)9	9	4	8	1
DYS395S1a	(AAC)13	15	3	13	1
DYS617a/b	(TTA)12	12	3	7,9;10	1,1;2

HG00140 ERR016167 CODIS markers detected by STRScan
Marker	Repeat Motif	Reference allele	Period	STRScan allele	Supp. Reads
D13S317	(TATC)11	11	4	8	1
CSF1PO	(AGAT)13	13	4	11	1
D7S820	(GATA)13	13	4	8	1

HG00145 YSTRs markers detected by STRScan
Marker	Repeat Motif	Ref Allele	Period	STRScan allele	Supp. Reads
DYS385a/b	(GAAA)14	14	4	11	3
DYS390	(TAGA)4(CAGA)1(TAGA)11(CAGA)8	24	4	15	1
DYS406S1	(TATC)10	10	4	10	1
DYS435	(TGGA)9	9	4	11	1
DYS436	(GTT)12	12	3	12	4
DYS472	(AAT)8	8	3	8	2
DYS520	(ATAG)10(ATAC)10	20	4	14	2
GATA-H4	(TAGA)12	12	4	12	1
YCAII	(CA)23	23	2	19	1

HG00145 CODIS markers detected by STRScan
Marker	Repeat Motif	Ref Allele	Period	STRScan allele	Supp. Reads
D8S1179	(TCTA)1(TCTG)1(TCTA)11	13	4	8	1
D16S539	(GATA)11	11	4	13	1
PentaD	(AAAGA)13	13	5	9	1

HG00140 ERR251013 YSTR markers detected by STRScan
Marker	Repeat Motif	Ref Allele	Period	STRScan allele	Supp. Reads
DYS385a/b	(GAAA)14	14	4	12	1
DYS391	(TCTA)11	11	4	10	2
DYS406S1	(TATC)10	10	4	10	1
DYS435	(TGGA)9	9	4	11	1
DYS436	(GTT)12	12	3	12	1
DYS437	(TCTA)10(TCTG)2(TCTA)4	16	4	16	2
DYS438	(TTTTC)10	10	5	10	1
DYS439	(GATA)13	13	4	11	1
DYS450	(TTTTA)9	8	5	9	1
DYS458	(GAAA)16	16	4	15	2
DYS460	(ATAG)10	10	4	11	1
DYS472	(AAT)8	8	3	8	2
DYS485	(TTA)16	16	3	13	1
DYS537	(TCTA)10	10	4	11	2
DYS549	(GATA)13	13	4	13	1
DYS557	(TTTC)16	16	4	15	1
DYS568	(TAAA)10	11	4	10	1
DYS578	(AAAT)9	9	4	8	2
GATA-H4	(TAGA)12	12	4	11	2
DYS395S1a	(AAC)13	15	3	13	1
DYS464	(CCTT)15	15	4	12	2
DYS389I	(TCTG)3(TCTA)9	12	4	12	1
DYS434	(CTAT)9	9	4	9	1
DYS445	(TTTA)12	12	4	11	1
DYS455	(AAAT)11	11	4	8	1
DYS459a/b	(TAAA)10	10	4	9;9	1;1
DYS494	(TTA)10	10	3	9	1
DYS533	(ATCT)12	12	4	12	1
DYS534	(CTTT)15	15	4	15	1
DYS537	(TCTA)10	10	4	11	2
DYS590	(TTTTG)8	8	5	8	2
DYS617	(TTA)12	12	3	10	1
GATA-A10	(TCCA)2(TATC)13	15	4	14	1

HG00140 ERR251013 CODIS markers detected by STRScan
Marker	Repeat Motif	Ref Allele	Period	STRScan allele	Supp. Reads
TPOX	(AATG)8	8	4	8	1
CSF1PO	(AGAT)13	13	4	11	1
D7S820	(GATA)13	13	4	8	3
PentaE	(AAAGA)5	5	5	13	1
D16S539	(GATA)11	11	4	11	2
D18S51	(AGAA)18	18	4	15	1
TH01	(AATG)7	7	4	5;10	1;2

HG00149 ERR013144 YSTR markers detected by STRScan
Marker	Repeat Motif	Ref Allele	Period	STRScan allele	Supp. Reads
DYS385a/b	(GAAA)14	14	4	13;13	1;1
DYS389I	(TCTG)3(TCTA)9	12	4	13	1
DYS435	(TGGA)9	9	4	11	2
DYS439	(GATA)13	13	4	11	2
DYS454	(AAAT)11	11	4	11	1
DYS456	(AGAT)15	15	4	17	1
DYS533	(ATCT)12	12	4	12	2
GATA-A10	(TCCA)2(TATC)13	15	4	14	3
DYS434	(CTAT)9	9	4	9	2
DYS436	(GTT)12	12	3	12	1
DYS492	(TTA)11	12	3	12	1
DYS575	(AAAT)10	10	4	10	2
DYS638	(TTTA)11	11	4	11	1
DYS717	(GTACT)6(GTATT)10	16	5	15	1
DYS395S1a	(AAC)13	15	3	13	1

HG00149(ERR013144) CODIS markers detected by STRScan
Marker	Repeat Motif	Ref Allele	Period	STRScan allele	Supp. Reads
CSF1POa/b	(AGAT)13	13	4	11	2
D16S539	(GATA)11	11	4	11	1
PentaD	(AAAGA)13	13	5	14	1