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SEQUENCE ANALYSIS
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 ClustalW   Results
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Results of search
Number of sequences 5
Alignment score 12592
Sequence format Pearson
Sequence type aa
ClustalW version 1.82
JalView
Output file clustalw-20050930-15121550.output
Alignment file clustalw-20050930-15121550.aln
Guide tree file clustalw-20050930-15121550.dnd
Your input file clustalw-20050930-15121550.input

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Scores Table

SeqA Name         Len(aa)  SeqB Name         Len(aa)  Score
===========================================================
1    FOSB_MOUSE   338      2    FOSB_HUMAN   338      95   
1    FOSB_MOUSE   338      3    FOS_CHICK    367      43   
1    FOSB_MOUSE   338      4    FOS_RAT      380      43   
1    FOSB_MOUSE   338      5    FOS_MOUSE    380      44   
2    FOSB_HUMAN   338      3    FOS_CHICK    367      43   
2    FOSB_HUMAN   338      4    FOS_RAT      380      43   
2    FOSB_HUMAN   338      5    FOS_MOUSE    380      45   
3    FOS_CHICK    367      4    FOS_RAT      380      74   
3    FOS_CHICK    367      5    FOS_MOUSE    380      75   
4    FOS_RAT      380      5    FOS_MOUSE    380      96   
===========================================================
PLEASE NOTE: Some scores may be missing from the above table if the alignment was done using multiple CPU mode. Please check the output.




Alignment

CLUSTAL W (1.82) multiple sequence alignment


FOS_RAT         MMFSGFNADYEASSSRCSSASPAGDSLSYYHSPADSFSSMGSPVNTQDFCADLSVSSANF 60
FOS_MOUSE       MMFSGFNADYEASSSRCSSASPAGDSLSYYHSPADSFSSMGSPVNTQDFCADLSVSSANF 60
FOS_CHICK       MMYQGFAGEYEAPSSRCSSASPAGDSLTYYPSPADSFSSMGSPVNSQDFCTDLAVSSANF 60
FOSB_MOUSE      -MFQAFPGDYDS-GSRCSS-SPSAESQ--YLSSVDSFGSPPTAAASQE-CAGLGEMPGSF 54
FOSB_HUMAN      -MFQAFPGDYDS-GSRCSS-SPSAESQ--YLSSVDSFGSPPTAAASQE-CAGLGEMPGSF 54
                 *:..* .:*:: .***** **:.:*   * *..***.*  :.. :*: *:.*.  ...*

FOS_RAT         IPTVTAISTSPDLQWLVQPTLVSSVAPSQ-------TRAPHPYGLPTPS-TGAYARAGVV 112
FOS_MOUSE       IPTVTAISTSPDLQWLVQPTLVSSVAPSQ-------TRAPHPYGLPTQS-AGAYARAGMV 112
FOS_CHICK       VPTVTAISTSPDLQWLVQPTLISSVAPSQ-------NRG-HPYGVPAPAPPAAYSRPAVL 112
FOSB_MOUSE      VPTVTAITTSQDLQWLVQPTLISSMAQSQGQPLASQPPAVDPYDMPGTS----YSTPGLS 110
FOSB_HUMAN      VPTVTAITTSQDLQWLVQPTLISSMAQSQGQPLASQPPVVDPYDMPGTS----YSTPGMS 110
                :******:** **********:**:* **           .**.:*  :    *: ..: 

FOS_RAT         KTMSGGRAQSIG--------------------RRGKVEQLSPEEEEKRRIRRERNKMAAA 152
FOS_MOUSE       KTVSGGRAQSIG--------------------RRGKVEQLSPEEEEKRRIRRERNKMAAA 152
FOS_CHICK       KAP-GGRGQSIG--------------------RRGKVEQLSPEEEEKRRIRRERNKMAAA 151
FOSB_MOUSE      AYSTGGASGSGGPSTSTTTSGPVSARPARARPRRPREETLTPEEEEKRRVRRERNKLAAA 170
FOSB_HUMAN      GYSSGGASGSGGPSTSGTTSGPGPARPARARPRRPREETLTPEEEEKRRVRRERNKLAAA 170
                    ** . * *                    ** : * *:********:******:***

FOS_RAT         KCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAAHRPACKIPNDLGF 212
FOS_MOUSE       KCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAAHRPACKIPDDLGF 212
FOS_CHICK       KCRNRRRELTDTLQAETDQLEEEKSALQAEIANLLKEKEKLEFILAAHRPACKMPEELRF 211
FOSB_MOUSE      KCRNRRRELTDRLQAETDQLEEEKAELESEIAELQKEKERLEFVLVAHKPGCKIPYEEG- 229
FOSB_HUMAN      KCRNRRRELTDRLQAETDQLEEEKAELESEIAELQKEKERLEFVLVAHKPGCKIPYEEG- 229
                *********** *********:**: *::***:* ****:***:*.**:*.**:* :   

FOS_RAT         PEEMSVTS-LDLTGGLPEATTPESEEAFTLPLLNDPEPK-PSLEPVKNISNMELKAEPFD 270
FOS_MOUSE       PEEMSVAS-LDLTGGLPEASTPESEEAFTLPLLNDPEPK-PSLEPVKSISNVELKAEPFD 270
FOS_CHICK       SEELAAATALDLG----APSPAAAEEAFALPLMTEAPPAVPPKEPSG--SGLELKAEPFD 265
FOSB_MOUSE      PGPGPLAEVRDLPG-----STSAKEDGFGWLLPPPPPPP-----------------LPFQ 267
FOSB_HUMAN      PGPGPLAEVRDLPG-----SAPAKEDGFSWLLPPPPPPP-----------------LPFQ 267
                .   . :   **       :..  *:.*   *   . *                   **:

FOS_RAT         DFLFPASSRPSGSETARSVPDVDLSG--SFYAADWEPLHSSSLGMGPMVTELEPLCTPVV 328
FOS_MOUSE       DFLFPASSRPSGSETSRSVPDVDLSG--SFYAADWEPLHSNSLGMGPMVTELEPLCTPVV 328
FOS_CHICK       ELLFSAGPR----EASRSVPDMDLPGASSFYASDWEPLGAGSGG------ELEPLCTPVV 315
FOSB_MOUSE      --------------SSRDAP-PNLTA--SLFTHS----------------EVQVLGDPFP 294
FOSB_HUMAN      --------------TSQDAP-PNLTA--SLFTHS----------------EVQVLGDPFP 294
                              :::..*  :*..  *::: .                *:: *  *. 

FOS_RAT         TCTPSCTTYTSSFVFTYPEADSFPSCAAAHRKGSSSNEPSSDSLSSPTLLAL 380
FOS_MOUSE       TCTPGCTTYTSSFVFTYPEADSFPSCAAAHRKGSSSNEPSSDSLSSPTLLAL 380
FOS_CHICK       TCTPCPSTYTSTFVFTYPEADAFPSCAAAHRKGSSSNEPSSDSLSSPTLLAL 367
FOSB_MOUSE      VVSP---SYTSSFVLTCPEVSAF---AGAQR--TSGSEQPSDPLNSPSLLAL 338
FOSB_HUMAN      VVNP---SYTSSFVLTCPEVSAF---AGAQR--TSGSDQPSDPLNSPSLLAL 338
                . .*   :***:**:* **..:*   *.*:*  :*..: .**.*.**:****
PLEASE NOTE: Showing colors on large alignments is slow.




Guide Tree

(
(
(
FOSB_MOUSE:0.02318,
FOSB_HUMAN:0.01824)
:0.41596,
FOS_CHICK:0.12694)
:0.10523,
FOS_RAT:0.02011,
FOS_MOUSE:0.01147);


Cladogram

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