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Scores Table
Alignment Score Sequence Number Sequence Name Sequence Length
SeqA Name Len(aa) SeqB Name Len(aa) Score
===========================================================
1 FOSB_MOUSE 338 2 FOSB_HUMAN 338 95
1 FOSB_MOUSE 338 3 FOS_CHICK 367 43
1 FOSB_MOUSE 338 4 FOS_RAT 380 43
1 FOSB_MOUSE 338 5 FOS_MOUSE 380 44
2 FOSB_HUMAN 338 3 FOS_CHICK 367 43
2 FOSB_HUMAN 338 4 FOS_RAT 380 43
2 FOSB_HUMAN 338 5 FOS_MOUSE 380 45
3 FOS_CHICK 367 4 FOS_RAT 380 74
3 FOS_CHICK 367 5 FOS_MOUSE 380 75
4 FOS_RAT 380 5 FOS_MOUSE 380 96
=========================================================== PLEASE NOTE: Some scores may be missing from
the above table if the alignment was done using multiple CPU
mode. Please check the output.
Alignment Score Sequence Number Sequence Name Sequence Length
Alignment
CLUSTAL W (1.82) multiple sequence alignment
FOS_RAT MMFSGFNADYEASSSRCSSASPAGDSLSYYHSPADSFSSMGSPVNTQDFCADLSVSSANF 60
FOS_MOUSE MMFSGFNADYEASSSRCSSASPAGDSLSYYHSPADSFSSMGSPVNTQDFCADLSVSSANF 60
FOS_CHICK MMYQGFAGEYEAPSSRCSSASPAGDSLTYYPSPADSFSSMGSPVNSQDFCTDLAVSSANF 60
FOSB_MOUSE -MFQAFPGDYDS-GSRCSS-SPSAESQ--YLSSVDSFGSPPTAAASQE-CAGLGEMPGSF 54
FOSB_HUMAN -MFQAFPGDYDS-GSRCSS-SPSAESQ--YLSSVDSFGSPPTAAASQE-CAGLGEMPGSF 54
*:..* .:*:: .***** **:.:* * *..***.* :.. :*: *:.*. ...*
FOS_RAT IPTVTAISTSPDLQWLVQPTLVSSVAPSQ-------TRAPHPYGLPTPS-TGAYARAGVV 112
FOS_MOUSE IPTVTAISTSPDLQWLVQPTLVSSVAPSQ-------TRAPHPYGLPTQS-AGAYARAGMV 112
FOS_CHICK VPTVTAISTSPDLQWLVQPTLISSVAPSQ-------NRG-HPYGVPAPAPPAAYSRPAVL 112
FOSB_MOUSE VPTVTAITTSQDLQWLVQPTLISSMAQSQGQPLASQPPAVDPYDMPGTS----YSTPGLS 110
FOSB_HUMAN VPTVTAITTSQDLQWLVQPTLISSMAQSQGQPLASQPPVVDPYDMPGTS----YSTPGMS 110
:******:** **********:**:* ** .**.:* : *: ..:
FOS_RAT KTMSGGRAQSIG--------------------RRGKVEQLSPEEEEKRRIRRERNKMAAA 152
FOS_MOUSE KTVSGGRAQSIG--------------------RRGKVEQLSPEEEEKRRIRRERNKMAAA 152
FOS_CHICK KAP-GGRGQSIG--------------------RRGKVEQLSPEEEEKRRIRRERNKMAAA 151
FOSB_MOUSE AYSTGGASGSGGPSTSTTTSGPVSARPARARPRRPREETLTPEEEEKRRVRRERNKLAAA 170
FOSB_HUMAN GYSSGGASGSGGPSTSGTTSGPGPARPARARPRRPREETLTPEEEEKRRVRRERNKLAAA 170
** . * * ** : * *:********:******:***
FOS_RAT KCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAAHRPACKIPNDLGF 212
FOS_MOUSE KCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAAHRPACKIPDDLGF 212
FOS_CHICK KCRNRRRELTDTLQAETDQLEEEKSALQAEIANLLKEKEKLEFILAAHRPACKMPEELRF 211
FOSB_MOUSE KCRNRRRELTDRLQAETDQLEEEKAELESEIAELQKEKERLEFVLVAHKPGCKIPYEEG- 229
FOSB_HUMAN KCRNRRRELTDRLQAETDQLEEEKAELESEIAELQKEKERLEFVLVAHKPGCKIPYEEG- 229
*********** *********:**: *::***:* ****:***:*.**:*.**:* :
FOS_RAT PEEMSVTS-LDLTGGLPEATTPESEEAFTLPLLNDPEPK-PSLEPVKNISNMELKAEPFD 270
FOS_MOUSE PEEMSVAS-LDLTGGLPEASTPESEEAFTLPLLNDPEPK-PSLEPVKSISNVELKAEPFD 270
FOS_CHICK SEELAAATALDLG----APSPAAAEEAFALPLMTEAPPAVPPKEPSG--SGLELKAEPFD 265
FOSB_MOUSE PGPGPLAEVRDLPG-----STSAKEDGFGWLLPPPPPPP-----------------LPFQ 267
FOSB_HUMAN PGPGPLAEVRDLPG-----SAPAKEDGFSWLLPPPPPPP-----------------LPFQ 267
. . : ** :.. *:.* * . * **:
FOS_RAT DFLFPASSRPSGSETARSVPDVDLSG--SFYAADWEPLHSSSLGMGPMVTELEPLCTPVV 328
FOS_MOUSE DFLFPASSRPSGSETSRSVPDVDLSG--SFYAADWEPLHSNSLGMGPMVTELEPLCTPVV 328
FOS_CHICK ELLFSAGPR----EASRSVPDMDLPGASSFYASDWEPLGAGSGG------ELEPLCTPVV 315
FOSB_MOUSE --------------SSRDAP-PNLTA--SLFTHS----------------EVQVLGDPFP 294
FOSB_HUMAN --------------TSQDAP-PNLTA--SLFTHS----------------EVQVLGDPFP 294
:::..* :*.. *::: . *:: * *.
FOS_RAT TCTPSCTTYTSSFVFTYPEADSFPSCAAAHRKGSSSNEPSSDSLSSPTLLAL 380
FOS_MOUSE TCTPGCTTYTSSFVFTYPEADSFPSCAAAHRKGSSSNEPSSDSLSSPTLLAL 380
FOS_CHICK TCTPCPSTYTSTFVFTYPEADAFPSCAAAHRKGSSSNEPSSDSLSSPTLLAL 367
FOSB_MOUSE VVSP---SYTSSFVLTCPEVSAF---AGAQR--TSGSEQPSDPLNSPSLLAL 338
FOSB_HUMAN VVNP---SYTSSFVLTCPEVSAF---AGAQR--TSGSDQPSDPLNSPSLLAL 338
. .* :***:**:* **..:* *.*:* :*..: .**.*.**:****
PLEASE NOTE: Showing colors on
large alignments is slow.
Guide Tree
(
(
(
FOSB_MOUSE:0.02318,
FOSB_HUMAN:0.01824)
:0.41596,
FOS_CHICK:0.12694)
:0.10523,
FOS_RAT:0.02011,
FOS_MOUSE:0.01147);
Cladogram
Right-click on the above tree to see display
options. Problems printing? Read how to print a Phylogram or
Cladogram .