Whole genome analysis of segmental duplications

Whole genome analysis of segmental duplications (Dec. 2005)

Total input: 28856 alignments (gzipped).

Summary of duplications groups in each chromosomes.

Chromosome	# alignments	# simple groups¹	# groups	regions		# units²	largest group			largest componens
Chromosome	# alignments	# simple groups¹	# groups	Total number	intra-chromsome	# units²	# regions	# duplications	# units	Maximal multiplicity	# units
1	3622	256	156	1708	656	571	327	1100	379	31	337
2	3028	175	108	1618	442	369	507	1147	294	23	276
3	2089	179	110	1329	401	192	225	465	202	41	122
4	2040	144	84	1048	312	265	141	276	115	35	105
5	1970	154	102	1180	383	163	149	187	102	26	95
6	1277	141	113	1161	379	198	121	158	46	26	44
7	3613	134	115	1375	518	379	296	998	334	22	318
8	1848	116	73	880	234	284	88	240	240	20	222
9	2642	105	76	1197	296	299	422	1222	239	13	212
10	2105	121	98	1261	376	287	231	334	195	18	188
11	1900	132	89	1017	326	202	144	173	134	12	126
12	1157	144	96	1038	345	209	96	138	142	10	128
13	1249	64	65	833	228	298	114	116	170	6	162
14	969	87	59	740	204	158	140	227	106	3	101
15	3397	78	57	988	266	399	373	1073	354	39	288
16	2663	74	49	920	214	251	167	400	116	25	110
17	1768	102	58	947	368	256	392	828	132	8	120
18	738	61	33	624	116	233	214	219	168	22	158
19	1112	117	63	783	339	260	107	132	140	14	134
20	479	63	34	471	125	170	70	102	122	24	116
21	566	31	20	435	75	189	184	237	160	22	154
22	1209	37	49	654	189	129	183	259	84	15	56
X	1705	255	162	1442	657	355	57	168	210	18	195
Y	1135	35	43	534	166	332	258	339	248	18	190

¹ The simple groups are the groups having only one pairwise alignments.
² The duplication units longer than 600 are counted.

Please contact Haixu Tang for details.